How to do Affinity based Clustering in Python?
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How to do Affinity based Clustering in Python?

How to do Affinity based Clustering in Python?

This recipe helps you do Affinity based Clustering in Python

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Recipe Objective

Have you ever tried to do affinity based Clustering in python? Clustering can give us an idea that how the data set is in groups and affinity based is very usefull sometimes.

So this is the recipe on how we can do Affinity based Clustering in Python.

Step 1 - Import the library

from sklearn import datasets from sklearn.preprocessing import StandardScaler from sklearn.cluster import AffinityPropagation import pandas as pd import seaborn as sns import matplotlib.pyplot as plt

We have imported datasets, StandardScaler, AffinityPropagation, pandas, and seaborn which will be needed for the dataset.

Step 2 - Setting up the Data

We have imported inbuilt wine dataset and stored data in x. We have plotted a heatmap for corelation of features. wine = datasets.load_wine() X = wine.data; data = pd.DataFrame(X) cor = data.corr() fig = plt.figure(figsize=(10,10)); sns.heatmap(cor, square = True); plt.show()

Step 3 - Training model and Predicting Clusters

Here we we are first standarizing the data by standardscaler. scaler = StandardScaler() X_std = scaler.fit_transform(X) Now we are using AffinityPropagation for clustering with features:

  • damping: It is the extent to which the current value is maintained relative to incoming values, by default it is 0.5
  • max_iter: It is the number of iteration we want to do
  • affinity: In this we have to choose between euclidean and precomputed.
clt = AffinityPropagation(damping=0.5, max_iter=500, affinity="euclidean") We are training the data by using clt.fit and printing the number of clusters. model = clt.fit(X_std) n_clusters_ = len(model.cluster_centers_indices_) print("Number of Clusters: ",n_clusters_) Finally we are predicting the clusters. clusters = pd.DataFrame(model.fit_predict(X_std)) data["Cluster"] = clusters

Step 4 - Visualizing the output

fig = plt.figure(figsize=(10,10)); ax = fig.add_subplot(111) scatter = ax.scatter(data[0],data[1], c=data["Cluster"],s=50) ax.set_title("AffinityPropagation Clustering") ax.set_xlabel("X0"); ax.set_ylabel("X1") plt.colorbar(scatter); plt.show()

We have plot a sactter plot which will show the clusters of data in different colour,


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